PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 332870
Common NameARALYDRAFT_332870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 164aa    MW: 17738.4 Da    PI: 4.9102
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
332870genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.8e-1793144156
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
             ++ykGVr ++ +g+W+AeI+dps+   + r +lg+f tae Aa  +++a+++l ge
  332870  93 KKYKGVRKKP-SGKWAAEIWDPSS---KSRKWLGTFLTAETAASSYDEAARSLSGE 144
             59*****999.7*********854...5************************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.89E-2393144No hitNo description
PfamPF008477.8E-994143IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1594145IPR016177DNA-binding domain
SMARTSM003801.2E-2194151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2294145IPR001471AP2/ERF domain
PROSITE profilePS5103218.50594160IPR001471AP2/ERF domain
PRINTSPR003671.3E-695106IPR001471AP2/ERF domain
PRINTSPR003671.3E-6117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDHSENVPSN DQHENVTLVA PSEEHEIMVS ALQQVISNSR ADASSSNLIA SEGLSPPDAG  60
PFGSPYSNSP LCRIIGCEGC TLQRPHREIE KEKKYKGVRK KPSGKWAAEI WDPSSKSRKW  120
LGTFLTAETA ASSYDEAARS LSGEHQQDVA KRTEEELNGG GDD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00594DAPTransfer from AT5G67000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266407e-64AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBankAY5608597e-64AY560859.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g67000) mRNA, complete cds.
GenBankBT0247027e-64BT024702.1 Arabidopsis thaliana At5g67000 mRNA, complete cds.
GenBankCP0026887e-64CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ1457757e-64DQ145775.1 Arabidopsis thaliana AP2/EREBP transcription factor (At5g67000) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865035.11e-119hypothetical protein ARALYDRAFT_332870
SwissprotQ38Q403e-64EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLD7MLD11e-119D7MLD1_ARALL; Putative uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_80022131e-118(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67000.12e-55ERF family protein